MVC Architecture in Bioinformatics web applications and its Java implementation

Shoba Ranganathan; Durgaprasad Bollina; Bernett T.K. Lee

MVC Architecture in Bioinformatics web applications and its Java implementation

Shoba Ranganathan, Durgaprasad Bollina, Bernett T.K. Lee

Research output: Chapter in Book/Report/Conference proceeding › Conference proceeding contribution › peer-review

Abstract

Alternative transcript diversity manifests itself a prime cause of complexity in higher eukaryotes. The Alternative Splicing Graph Server (ASGS) is a web service facilitating the systematic study of alternatively spliced genes of higher eukaryotes by generating splicing graphs for the compact visual representation of transcript diversity from a single gene. Taking a set of transcripts in General Feature Format as input, ASGS identifies distinct reference and variable exons, generates a transcript splicing graph, an exon summary, splicing events classification and a single line graph to facilitate experimental analysis

Original language	English
Title of host publication	iiWAS 2005
Subtitle of host publication	the Seventh International Conference on Information Integration and Web-based Applications & Services : September 19-21, 2005, Kuala Lumpur, Malaysia
Editors	Gabriele Kotsis, David Tanier, Stephane Bressan, Ismail Khalil Ibrahim, Mokhtar, Salimah
Publisher	Austrian Computer Society
Pages	759-764
Number of pages	6
ISBN (Print)	3854031963
Publication status	Published - 2005
Event	International Conference on Information Integration and Web-based Applications and Services (7th : 2005) - Kuala Lumpur Duration: 19 Sept 2005 → 21 Sept 2005

Conference

Conference	International Conference on Information Integration and Web-based Applications and Services (7th : 2005)
City	Kuala Lumpur
Period	19/09/05 → 21/09/05

Cite this

Ranganathan, S., Bollina, D., & Lee, B. T. K. (2005). MVC Architecture in Bioinformatics web applications and its Java implementation. In G. Kotsis, D. Tanier, S. Bressan, I. K. Ibrahim, Mokhtar, & Salimah (Eds.), iiWAS 2005: the Seventh International Conference on Information Integration and Web-based Applications & Services : September 19-21, 2005, Kuala Lumpur, Malaysia (pp. 759-764). Austrian Computer Society.

Ranganathan, Shoba ; Bollina, Durgaprasad ; Lee, Bernett T.K. / MVC Architecture in Bioinformatics web applications and its Java implementation. iiWAS 2005: the Seventh International Conference on Information Integration and Web-based Applications & Services : September 19-21, 2005, Kuala Lumpur, Malaysia. editor / Gabriele Kotsis ; David Tanier ; Stephane Bressan ; Ismail Khalil Ibrahim ; Mokhtar ; Salimah. Austrian Computer Society, 2005. pp. 759-764

@inproceedings{f6344e944e284a048e0e63cc1c520119,

title = "MVC Architecture in Bioinformatics web applications and its Java implementation",

abstract = "Alternative transcript diversity manifests itself a prime cause of complexity in higher eukaryotes. The Alternative Splicing Graph Server (ASGS) is a web service facilitating the systematic study of alternatively spliced genes of higher eukaryotes by generating splicing graphs for the compact visual representation of transcript diversity from a single gene. Taking a set of transcripts in General Feature Format as input, ASGS identifies distinct reference and variable exons, generates a transcript splicing graph, an exon summary, splicing events classification and a single line graph to facilitate experimental analysis",

author = "Shoba Ranganathan and Durgaprasad Bollina and Lee, {Bernett T.K.}",

year = "2005",

language = "English",

isbn = "3854031963",

pages = "759--764",

editor = "Gabriele Kotsis and David Tanier and Stephane Bressan and Ibrahim, {Ismail Khalil} and Mokhtar and Salimah",

booktitle = "iiWAS 2005",

publisher = "Austrian Computer Society",

address = "Austria",

note = "International Conference on Information Integration and Web-based Applications and Services (7th : 2005) ; Conference date: 19-09-2005 Through 21-09-2005",

}

Ranganathan, S, Bollina, D & Lee, BTK 2005, MVC Architecture in Bioinformatics web applications and its Java implementation. in G Kotsis, D Tanier, S Bressan, IK Ibrahim, Mokhtar & Salimah (eds), iiWAS 2005: the Seventh International Conference on Information Integration and Web-based Applications & Services : September 19-21, 2005, Kuala Lumpur, Malaysia. Austrian Computer Society, pp. 759-764, International Conference on Information Integration and Web-based Applications and Services (7th : 2005), Kuala Lumpur, 19/09/05.

MVC Architecture in Bioinformatics web applications and its Java implementation. / Ranganathan, Shoba; Bollina, Durgaprasad; Lee, Bernett T.K.
iiWAS 2005: the Seventh International Conference on Information Integration and Web-based Applications & Services : September 19-21, 2005, Kuala Lumpur, Malaysia. ed. / Gabriele Kotsis; David Tanier; Stephane Bressan; Ismail Khalil Ibrahim; Mokhtar; Salimah. Austrian Computer Society, 2005. p. 759-764.

Research output: Chapter in Book/Report/Conference proceeding › Conference proceeding contribution › peer-review

TY - GEN

T1 - MVC Architecture in Bioinformatics web applications and its Java implementation

AU - Ranganathan, Shoba

AU - Bollina, Durgaprasad

AU - Lee, Bernett T.K.

PY - 2005

Y1 - 2005

N2 - Alternative transcript diversity manifests itself a prime cause of complexity in higher eukaryotes. The Alternative Splicing Graph Server (ASGS) is a web service facilitating the systematic study of alternatively spliced genes of higher eukaryotes by generating splicing graphs for the compact visual representation of transcript diversity from a single gene. Taking a set of transcripts in General Feature Format as input, ASGS identifies distinct reference and variable exons, generates a transcript splicing graph, an exon summary, splicing events classification and a single line graph to facilitate experimental analysis

AB - Alternative transcript diversity manifests itself a prime cause of complexity in higher eukaryotes. The Alternative Splicing Graph Server (ASGS) is a web service facilitating the systematic study of alternatively spliced genes of higher eukaryotes by generating splicing graphs for the compact visual representation of transcript diversity from a single gene. Taking a set of transcripts in General Feature Format as input, ASGS identifies distinct reference and variable exons, generates a transcript splicing graph, an exon summary, splicing events classification and a single line graph to facilitate experimental analysis

M3 - Conference proceeding contribution

SN - 3854031963

SP - 759

EP - 764

BT - iiWAS 2005

A2 - Kotsis, Gabriele

A2 - Tanier, David

A2 - Bressan, Stephane

A2 - Ibrahim, Ismail Khalil

A2 - Mokhtar, null

A2 - Salimah, null

PB - Austrian Computer Society

T2 - International Conference on Information Integration and Web-based Applications and Services (7th : 2005)

Y2 - 19 September 2005 through 21 September 2005

ER -

Ranganathan S, Bollina D, Lee BTK. MVC Architecture in Bioinformatics web applications and its Java implementation. In Kotsis G, Tanier D, Bressan S, Ibrahim IK, Mokhtar, Salimah, editors, iiWAS 2005: the Seventh International Conference on Information Integration and Web-based Applications & Services : September 19-21, 2005, Kuala Lumpur, Malaysia. Austrian Computer Society. 2005. p. 759-764

MVC Architecture in Bioinformatics web applications and its Java implementation

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