Proteomic analysis of crop plants under low temperature: a review of cold responsive proteins

Javad Gharechahi, Golandam Sharifi, Setsuko Komatsu, Ghasem Hosseini Salekdeh

Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

Abstract

Cold stress is one of the major environmental limiting factors affecting growth, development, and geographical distribution of many plant species especially in temperate regions where plants are seasonally exposed to low or freezing temperatures. During evolution, plants have evolved physiological, morphological, and molecular mechanisms to tolerate low temperatures. Understanding the molecular basis of plant cold stress tolerance is of great importance since it provides valuable information required for improving cold stress tolerance of existing crop cultivars with high yield and limited tolerance to low temperatures. At molecular level, the response of plants to low temperatures include changes in expression, abundance, post translational modifications, and subcellular localization of proteins which allow plants to adapt to low temperatures and to withstand freezing. Comparative proteomic analyses have revealed a list of proteins that are newly synthesized, induced or repressed in response to low temperature in different crop species. These include proteins whose functions are directly involved in cold and freezing tolerance including dehydrins, late embryogenesis abundant (LEA) proteins, cold regulated (COR) proteins, anti-freezing proteins, and pathogenesis related (PR) proteins. Cold stress is always associated with changes in cellular homeostasis which leads to an increased generation of reactive oxygen species (ROS) and therefore, elicits profound changes in abundance and activities of ROS scavenging enzymes. In addition, during cold stress, the abundance of proteins associated with carbohydrate metabolism, photosynthesis, protein synthesis and processing including those involved in folding and repairs of damaged proteins changes significantly to alleviate the damaging effects of low temperature. In this chapter, proteomics tools and techniques are introduced and the challenges faced with plant materials are discussed. Subsequently, the function of cold responsive proteins is reviewed in the context of cold stress tolerance in different crop species.

LanguageEnglish
Title of host publicationAgricultural proteomics volume 2
Subtitle of host publicationenvironmental stresses
EditorsGhasem Hosseini Salekdeh
Place of PublicationCham
PublisherSpringer, Springer Nature
Chapter5
Pages97-127
Number of pages31
ISBN (Electronic)9783319432786
ISBN (Print)9783319432762
DOIs
Publication statusPublished - 1 Jan 2016
Externally publishedYes

Fingerprint

Proteomics
proteomics
Crops
Proteins
cold stress
Temperature
crops
temperature
proteins
Freezing
stress tolerance
cold tolerance
reactive oxygen species
freezing
Reactive Oxygen Species
Cold Shock Proteins and Peptides
pathogenesis-related proteins
Plant Dispersal
post-translational modification
freezing point

Keywords

  • 2-DE
  • Cold acclimation
  • Cold stress
  • Low temperature
  • Mass spectrometry
  • Proteomics

Cite this

Gharechahi, J., Sharifi, G., Komatsu, S., & Salekdeh, G. H. (2016). Proteomic analysis of crop plants under low temperature: a review of cold responsive proteins. In G. H. Salekdeh (Ed.), Agricultural proteomics volume 2: environmental stresses (pp. 97-127). Cham: Springer, Springer Nature. https://doi.org/10.1007/978-3-319-43278-6_5
Gharechahi, Javad ; Sharifi, Golandam ; Komatsu, Setsuko ; Salekdeh, Ghasem Hosseini. / Proteomic analysis of crop plants under low temperature : a review of cold responsive proteins. Agricultural proteomics volume 2: environmental stresses. editor / Ghasem Hosseini Salekdeh. Cham : Springer, Springer Nature, 2016. pp. 97-127
@inbook{f6377fe2ee09479280398f4af3adaae6,
title = "Proteomic analysis of crop plants under low temperature: a review of cold responsive proteins",
abstract = "Cold stress is one of the major environmental limiting factors affecting growth, development, and geographical distribution of many plant species especially in temperate regions where plants are seasonally exposed to low or freezing temperatures. During evolution, plants have evolved physiological, morphological, and molecular mechanisms to tolerate low temperatures. Understanding the molecular basis of plant cold stress tolerance is of great importance since it provides valuable information required for improving cold stress tolerance of existing crop cultivars with high yield and limited tolerance to low temperatures. At molecular level, the response of plants to low temperatures include changes in expression, abundance, post translational modifications, and subcellular localization of proteins which allow plants to adapt to low temperatures and to withstand freezing. Comparative proteomic analyses have revealed a list of proteins that are newly synthesized, induced or repressed in response to low temperature in different crop species. These include proteins whose functions are directly involved in cold and freezing tolerance including dehydrins, late embryogenesis abundant (LEA) proteins, cold regulated (COR) proteins, anti-freezing proteins, and pathogenesis related (PR) proteins. Cold stress is always associated with changes in cellular homeostasis which leads to an increased generation of reactive oxygen species (ROS) and therefore, elicits profound changes in abundance and activities of ROS scavenging enzymes. In addition, during cold stress, the abundance of proteins associated with carbohydrate metabolism, photosynthesis, protein synthesis and processing including those involved in folding and repairs of damaged proteins changes significantly to alleviate the damaging effects of low temperature. In this chapter, proteomics tools and techniques are introduced and the challenges faced with plant materials are discussed. Subsequently, the function of cold responsive proteins is reviewed in the context of cold stress tolerance in different crop species.",
keywords = "2-DE, Cold acclimation, Cold stress, Low temperature, Mass spectrometry, Proteomics",
author = "Javad Gharechahi and Golandam Sharifi and Setsuko Komatsu and Salekdeh, {Ghasem Hosseini}",
year = "2016",
month = "1",
day = "1",
doi = "10.1007/978-3-319-43278-6_5",
language = "English",
isbn = "9783319432762",
pages = "97--127",
editor = "Salekdeh, {Ghasem Hosseini}",
booktitle = "Agricultural proteomics volume 2",
publisher = "Springer, Springer Nature",
address = "United States",

}

Gharechahi, J, Sharifi, G, Komatsu, S & Salekdeh, GH 2016, Proteomic analysis of crop plants under low temperature: a review of cold responsive proteins. in GH Salekdeh (ed.), Agricultural proteomics volume 2: environmental stresses. Springer, Springer Nature, Cham, pp. 97-127. https://doi.org/10.1007/978-3-319-43278-6_5

Proteomic analysis of crop plants under low temperature : a review of cold responsive proteins. / Gharechahi, Javad; Sharifi, Golandam; Komatsu, Setsuko; Salekdeh, Ghasem Hosseini.

Agricultural proteomics volume 2: environmental stresses. ed. / Ghasem Hosseini Salekdeh. Cham : Springer, Springer Nature, 2016. p. 97-127.

Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

TY - CHAP

T1 - Proteomic analysis of crop plants under low temperature

T2 - a review of cold responsive proteins

AU - Gharechahi, Javad

AU - Sharifi, Golandam

AU - Komatsu, Setsuko

AU - Salekdeh, Ghasem Hosseini

PY - 2016/1/1

Y1 - 2016/1/1

N2 - Cold stress is one of the major environmental limiting factors affecting growth, development, and geographical distribution of many plant species especially in temperate regions where plants are seasonally exposed to low or freezing temperatures. During evolution, plants have evolved physiological, morphological, and molecular mechanisms to tolerate low temperatures. Understanding the molecular basis of plant cold stress tolerance is of great importance since it provides valuable information required for improving cold stress tolerance of existing crop cultivars with high yield and limited tolerance to low temperatures. At molecular level, the response of plants to low temperatures include changes in expression, abundance, post translational modifications, and subcellular localization of proteins which allow plants to adapt to low temperatures and to withstand freezing. Comparative proteomic analyses have revealed a list of proteins that are newly synthesized, induced or repressed in response to low temperature in different crop species. These include proteins whose functions are directly involved in cold and freezing tolerance including dehydrins, late embryogenesis abundant (LEA) proteins, cold regulated (COR) proteins, anti-freezing proteins, and pathogenesis related (PR) proteins. Cold stress is always associated with changes in cellular homeostasis which leads to an increased generation of reactive oxygen species (ROS) and therefore, elicits profound changes in abundance and activities of ROS scavenging enzymes. In addition, during cold stress, the abundance of proteins associated with carbohydrate metabolism, photosynthesis, protein synthesis and processing including those involved in folding and repairs of damaged proteins changes significantly to alleviate the damaging effects of low temperature. In this chapter, proteomics tools and techniques are introduced and the challenges faced with plant materials are discussed. Subsequently, the function of cold responsive proteins is reviewed in the context of cold stress tolerance in different crop species.

AB - Cold stress is one of the major environmental limiting factors affecting growth, development, and geographical distribution of many plant species especially in temperate regions where plants are seasonally exposed to low or freezing temperatures. During evolution, plants have evolved physiological, morphological, and molecular mechanisms to tolerate low temperatures. Understanding the molecular basis of plant cold stress tolerance is of great importance since it provides valuable information required for improving cold stress tolerance of existing crop cultivars with high yield and limited tolerance to low temperatures. At molecular level, the response of plants to low temperatures include changes in expression, abundance, post translational modifications, and subcellular localization of proteins which allow plants to adapt to low temperatures and to withstand freezing. Comparative proteomic analyses have revealed a list of proteins that are newly synthesized, induced or repressed in response to low temperature in different crop species. These include proteins whose functions are directly involved in cold and freezing tolerance including dehydrins, late embryogenesis abundant (LEA) proteins, cold regulated (COR) proteins, anti-freezing proteins, and pathogenesis related (PR) proteins. Cold stress is always associated with changes in cellular homeostasis which leads to an increased generation of reactive oxygen species (ROS) and therefore, elicits profound changes in abundance and activities of ROS scavenging enzymes. In addition, during cold stress, the abundance of proteins associated with carbohydrate metabolism, photosynthesis, protein synthesis and processing including those involved in folding and repairs of damaged proteins changes significantly to alleviate the damaging effects of low temperature. In this chapter, proteomics tools and techniques are introduced and the challenges faced with plant materials are discussed. Subsequently, the function of cold responsive proteins is reviewed in the context of cold stress tolerance in different crop species.

KW - 2-DE

KW - Cold acclimation

KW - Cold stress

KW - Low temperature

KW - Mass spectrometry

KW - Proteomics

UR - http://www.scopus.com/inward/record.url?scp=85006380440&partnerID=8YFLogxK

U2 - 10.1007/978-3-319-43278-6_5

DO - 10.1007/978-3-319-43278-6_5

M3 - Chapter

SN - 9783319432762

SP - 97

EP - 127

BT - Agricultural proteomics volume 2

A2 - Salekdeh, Ghasem Hosseini

PB - Springer, Springer Nature

CY - Cham

ER -

Gharechahi J, Sharifi G, Komatsu S, Salekdeh GH. Proteomic analysis of crop plants under low temperature: a review of cold responsive proteins. In Salekdeh GH, editor, Agricultural proteomics volume 2: environmental stresses. Cham: Springer, Springer Nature. 2016. p. 97-127 https://doi.org/10.1007/978-3-319-43278-6_5