Red fox viromes in urban and rural landscapes

Sarah J. Campbell, Wilbur Ashley, Margarita Gil Fernández, Thomas M. Newsome, Francesca Di Giallonardo, Ayda Susana Ortiz-Baez, Jackie E. Mahar, Alison Towerton, Michael Gillings, Edward C. Holmes, Alexandra J. R. Carthey, Jemma L. Geoghegan*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

19 Citations (Scopus)
69 Downloads (Pure)


The Red fox (Vulpes vulpes) has established large populations in Australia’s urban and rural areas since its introduction following European settlement. The cryptic and highly adaptable nature of foxes allows them to invade cities and live among humans while remaining largely unnoticed. Urban living and access to anthropogenic food resources also influence fox ecology. Urban foxes grow larger, live at higher densities and are more social than their rural counterparts. These ecological changes in urban red foxes are likely to impact the pathogens that they harbour, and foxes could pose a disease risk to humans and other species that share these urban spaces. To investigate this possibility, we used a meta-transcriptomic approach to characterise the virome of urban and rural foxes across the Greater Sydney region in Australia. Urban and rural foxes differed significantly in virome composition, with rural foxes harbouring a greater abundance of viruses compared to their urban counterparts. We identified ten potentially novel vertebrate-associated viruses in both urban and rural foxes, some of which are related to viruses associated with disease in domestic species and humans. These included members of the Astroviridae, Picobirnaviridae, Hepeviridae and Picornaviridae as well as rabbit haemorrhagic disease virus-2 (RHDV2). This study sheds light on the viruses carried by urban and rural foxes and emphasises the need for greater genomic surveillance of foxes and other invasive species at the human-wildlife interface.
Original languageEnglish
Article numberveaa065
Pages (from-to)1-11
Number of pages11
JournalVirus Evolution
Issue number2
Publication statusPublished - Jul 2020


  • Canine
  • Carnivore
  • Exotic species
  • Metagenomics
  • Predator
  • Urban
  • Virus
  • Vulpes vulpes


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