Simple high-throughput annotation pipeline (SHAP)

Matthew Z. DeMaere*, Federico M. Lauro, Torsten Thomas, Sheree Yau, Ricardo Cavicchioli

*Corresponding author for this work

Research output: Contribution to journalArticle

2 Citations (Scopus)

Abstract

SHAP (simple high-throughput annotation pipeline) is a lightweight and scalable sequence annotation pipeline capable of supporting research efforts that generate or utilize large volumes of DNA sequence data. The software provides Grid capable analysis, relational storage and Web-based full-text searching of annotation results. Implemented in Java, SHAP recognizes the limited resources of many smaller research groups.

Original languageEnglish
Article numberbtr411
Pages (from-to)2431-2432
Number of pages2
JournalBioinformatics
Volume27
Issue number17
DOIs
Publication statusPublished - Sep 2011
Externally publishedYes

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    DeMaere, M. Z., Lauro, F. M., Thomas, T., Yau, S., & Cavicchioli, R. (2011). Simple high-throughput annotation pipeline (SHAP). Bioinformatics, 27(17), 2431-2432. [btr411]. https://doi.org/10.1093/bioinformatics/btr411