Simple high-throughput annotation pipeline (SHAP)

Matthew Z. DeMaere; Federico M. Lauro; Torsten Thomas; Sheree Yau; Ricardo Cavicchioli

doi:10.1093/bioinformatics/btr411

Simple high-throughput annotation pipeline (SHAP)

Matthew Z. DeMaere^*, Federico M. Lauro, Torsten Thomas, Sheree Yau, Ricardo Cavicchioli

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

4 Citations (Scopus)

Abstract

SHAP (simple high-throughput annotation pipeline) is a lightweight and scalable sequence annotation pipeline capable of supporting research efforts that generate or utilize large volumes of DNA sequence data. The software provides Grid capable analysis, relational storage and Web-based full-text searching of annotation results. Implemented in Java, SHAP recognizes the limited resources of many smaller research groups.

Original language	English
Article number	btr411
Pages (from-to)	2431-2432
Number of pages	2
Journal	Bioinformatics
Volume	27
Issue number	17
DOIs	https://doi.org/10.1093/bioinformatics/btr411
Publication status	Published - Sept 2011
Externally published	Yes

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10.1093/bioinformatics/btr411

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title = "Simple high-throughput annotation pipeline (SHAP)",

abstract = "SHAP (simple high-throughput annotation pipeline) is a lightweight and scalable sequence annotation pipeline capable of supporting research efforts that generate or utilize large volumes of DNA sequence data. The software provides Grid capable analysis, relational storage and Web-based full-text searching of annotation results. Implemented in Java, SHAP recognizes the limited resources of many smaller research groups.",

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AU - Thomas, Torsten

AU - Yau, Sheree

AU - Cavicchioli, Ricardo

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AB - SHAP (simple high-throughput annotation pipeline) is a lightweight and scalable sequence annotation pipeline capable of supporting research efforts that generate or utilize large volumes of DNA sequence data. The software provides Grid capable analysis, relational storage and Web-based full-text searching of annotation results. Implemented in Java, SHAP recognizes the limited resources of many smaller research groups.

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Simple high-throughput annotation pipeline (SHAP)

Abstract

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