Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative

Mark V. Brown; Jodie van de Kamp; Martin Ostrowski; Justin R. Seymour; Tim Ingleton; Lauren F. Messer; Thomas Jeffries; Nahshon Siboni; Bonnie Laverock; Jaume Bibiloni-Isaksson; Tiffanie M. Nelson; Frank Coman; Claire H. Davies; Dion Frampton; Mark Rayner; Kirianne Goossen; Stan Robert; Bronwyn Holmes; Guy C. J. Abell; Pascal Craw; Tim Kahlke; Swan Li San Sow; Kirsty McAllister; Jonathan Windsor; Michele Skuza; Ryan Crossing; Nicole Patten; Paul Malthouse; Paul D. van Ruth; Ian Paulsen; Jed A. Fuhrman; Anthony Richardson; Jason Koval; Andrew Bissett; Anna Fitzgerald; Tim Moltmann; Levente Bodrossy

doi:10.1038/sdata.2018.130

Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative

Mark V. Brown^*, Jodie van de Kamp, Martin Ostrowski, Justin R. Seymour, Tim Ingleton, Lauren F. Messer, Thomas Jeffries, Nahshon Siboni, Bonnie Laverock, Jaume Bibiloni-Isaksson, Tiffanie M. Nelson, Frank Coman, Claire H. Davies, Dion Frampton, Mark Rayner, Kirianne Goossen, Stan Robert, Bronwyn Holmes, Guy C. J. Abell, Pascal CrawTim Kahlke, Swan Li San Sow, Kirsty McAllister, Jonathan Windsor, Michele Skuza, Ryan Crossing, Nicole Patten, Paul Malthouse, Paul D. van Ruth, Ian Paulsen, Jed A. Fuhrman, Anthony Richardson, Jason Koval, Andrew Bissett, Anna Fitzgerald, Tim Moltmann, Levente Bodrossy

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

37 Citations (Scopus)

30 Downloads (Pure)

Abstract

Sustained observations of microbial dynamics are rare, especially in southern hemisphere waters. The Australian Marine Microbial Biodiversity Initiative (AMMBI) provides methodologically standardized, continental scale, temporal phylogenetic amplicon sequencing data describing Bacteria, Archaea and microbial Eukarya assemblages. Sequence data is linked to extensive physical, biological and chemical oceanographic contextual information. Samples are collected monthly to seasonally from multiple depths at seven sites: Darwin Harbour (Northern Territory), Yongala (Queensland), North Stradbroke Island (Queensland), Port Hacking (New South Wales), Maria Island (Tasmania), Kangaroo Island (South Australia), Rottnest Island (Western Australia). These sites span ~30° of latitude and ~38° longitude, range from tropical to cold temperate zones, and are influenced by both local and globally significant oceanographic and climatic features. All sequence datasets are provided in both raw and processed fashion. Currently 952 samples are publically available for bacteria and archaea which include 88,951,761 bacterial (72,435 unique) and 70,463,079 archaeal (24,205 unique) 16 S rRNA v1-3 gene sequences, and 388 samples are available for eukaryotes which include 39,801,050 (78,463 unique) 18 S rRNA v4 gene sequences.

Original language	English
Article number	180130
Pages (from-to)	1-10
Number of pages	10
Journal	Scientific Data
Volume	5
DOIs	https://doi.org/10.1038/sdata.2018.130
Publication status	Published - 17 Jul 2018

Bibliographical note

Copyright the Author(s) 2018. Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.

Access to Document

10.1038/sdata.2018.130Licence: CC BY

Publisher version (open access)Final published version, 1.06 MBLicence: CC BY

Cite this

Brown, M. V., van de Kamp, J., Ostrowski, M., Seymour, J. R., Ingleton, T., Messer, L. F., Jeffries, T., Siboni, N., Laverock, B., Bibiloni-Isaksson, J., Nelson, T. M., Coman, F., Davies, C. H., Frampton, D., Rayner, M., Goossen, K., Robert, S., Holmes, B., Abell, G. C. J., ... Bodrossy, L. (2018). Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative. Scientific Data, 5, 1-10. Article 180130. https://doi.org/10.1038/sdata.2018.130

@article{bbcd389feabd48cd9e213be164dafbf1,

title = "Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative",

abstract = "Sustained observations of microbial dynamics are rare, especially in southern hemisphere waters. The Australian Marine Microbial Biodiversity Initiative (AMMBI) provides methodologically standardized, continental scale, temporal phylogenetic amplicon sequencing data describing Bacteria, Archaea and microbial Eukarya assemblages. Sequence data is linked to extensive physical, biological and chemical oceanographic contextual information. Samples are collected monthly to seasonally from multiple depths at seven sites: Darwin Harbour (Northern Territory), Yongala (Queensland), North Stradbroke Island (Queensland), Port Hacking (New South Wales), Maria Island (Tasmania), Kangaroo Island (South Australia), Rottnest Island (Western Australia). These sites span ~30° of latitude and ~38° longitude, range from tropical to cold temperate zones, and are influenced by both local and globally significant oceanographic and climatic features. All sequence datasets are provided in both raw and processed fashion. Currently 952 samples are publically available for bacteria and archaea which include 88,951,761 bacterial (72,435 unique) and 70,463,079 archaeal (24,205 unique) 16 S rRNA v1-3 gene sequences, and 388 samples are available for eukaryotes which include 39,801,050 (78,463 unique) 18 S rRNA v4 gene sequences.",

author = "Brown, {Mark V.} and {van de Kamp}, Jodie and Martin Ostrowski and Seymour, {Justin R.} and Tim Ingleton and Messer, {Lauren F.} and Thomas Jeffries and Nahshon Siboni and Bonnie Laverock and Jaume Bibiloni-Isaksson and Nelson, {Tiffanie M.} and Frank Coman and Davies, {Claire H.} and Dion Frampton and Mark Rayner and Kirianne Goossen and Stan Robert and Bronwyn Holmes and Abell, {Guy C. J.} and Pascal Craw and Tim Kahlke and Sow, {Swan Li San} and Kirsty McAllister and Jonathan Windsor and Michele Skuza and Ryan Crossing and Nicole Patten and Paul Malthouse and {van Ruth}, {Paul D.} and Ian Paulsen and Fuhrman, {Jed A.} and Anthony Richardson and Jason Koval and Andrew Bissett and Anna Fitzgerald and Tim Moltmann and Levente Bodrossy",

note = "Copyright the Author(s) 2018. Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.",

year = "2018",

month = jul,

day = "17",

doi = "10.1038/sdata.2018.130",

language = "English",

volume = "5",

pages = "1--10",

journal = "Scientific Data",

issn = "2052-4463",

publisher = "The Author(s) SN -",

}

Brown, MV, van de Kamp, J, Ostrowski, M, Seymour, JR, Ingleton, T, Messer, LF, Jeffries, T, Siboni, N, Laverock, B, Bibiloni-Isaksson, J, Nelson, TM, Coman, F, Davies, CH, Frampton, D, Rayner, M, Goossen, K, Robert, S, Holmes, B, Abell, GCJ, Craw, P, Kahlke, T, Sow, SLS, McAllister, K, Windsor, J, Skuza, M, Crossing, R, Patten, N, Malthouse, P, van Ruth, PD, Paulsen, I, Fuhrman, JA, Richardson, A, Koval, J, Bissett, A, Fitzgerald, A, Moltmann, T & Bodrossy, L 2018, 'Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative', Scientific Data, vol. 5, 180130, pp. 1-10. https://doi.org/10.1038/sdata.2018.130

TY - JOUR

T1 - Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative

AU - Brown, Mark V.

AU - van de Kamp, Jodie

AU - Ostrowski, Martin

AU - Seymour, Justin R.

AU - Ingleton, Tim

AU - Messer, Lauren F.

AU - Jeffries, Thomas

AU - Siboni, Nahshon

AU - Laverock, Bonnie

AU - Bibiloni-Isaksson, Jaume

AU - Nelson, Tiffanie M.

AU - Coman, Frank

AU - Davies, Claire H.

AU - Frampton, Dion

AU - Rayner, Mark

AU - Goossen, Kirianne

AU - Robert, Stan

AU - Holmes, Bronwyn

AU - Abell, Guy C. J.

AU - Craw, Pascal

AU - Kahlke, Tim

AU - Sow, Swan Li San

AU - McAllister, Kirsty

AU - Windsor, Jonathan

AU - Skuza, Michele

AU - Crossing, Ryan

AU - Patten, Nicole

AU - Malthouse, Paul

AU - van Ruth, Paul D.

AU - Paulsen, Ian

AU - Fuhrman, Jed A.

AU - Richardson, Anthony

AU - Koval, Jason

AU - Bissett, Andrew

AU - Fitzgerald, Anna

AU - Moltmann, Tim

AU - Bodrossy, Levente

N1 - Copyright the Author(s) 2018. Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.

PY - 2018/7/17

Y1 - 2018/7/17

N2 - Sustained observations of microbial dynamics are rare, especially in southern hemisphere waters. The Australian Marine Microbial Biodiversity Initiative (AMMBI) provides methodologically standardized, continental scale, temporal phylogenetic amplicon sequencing data describing Bacteria, Archaea and microbial Eukarya assemblages. Sequence data is linked to extensive physical, biological and chemical oceanographic contextual information. Samples are collected monthly to seasonally from multiple depths at seven sites: Darwin Harbour (Northern Territory), Yongala (Queensland), North Stradbroke Island (Queensland), Port Hacking (New South Wales), Maria Island (Tasmania), Kangaroo Island (South Australia), Rottnest Island (Western Australia). These sites span ~30° of latitude and ~38° longitude, range from tropical to cold temperate zones, and are influenced by both local and globally significant oceanographic and climatic features. All sequence datasets are provided in both raw and processed fashion. Currently 952 samples are publically available for bacteria and archaea which include 88,951,761 bacterial (72,435 unique) and 70,463,079 archaeal (24,205 unique) 16 S rRNA v1-3 gene sequences, and 388 samples are available for eukaryotes which include 39,801,050 (78,463 unique) 18 S rRNA v4 gene sequences.

AB - Sustained observations of microbial dynamics are rare, especially in southern hemisphere waters. The Australian Marine Microbial Biodiversity Initiative (AMMBI) provides methodologically standardized, continental scale, temporal phylogenetic amplicon sequencing data describing Bacteria, Archaea and microbial Eukarya assemblages. Sequence data is linked to extensive physical, biological and chemical oceanographic contextual information. Samples are collected monthly to seasonally from multiple depths at seven sites: Darwin Harbour (Northern Territory), Yongala (Queensland), North Stradbroke Island (Queensland), Port Hacking (New South Wales), Maria Island (Tasmania), Kangaroo Island (South Australia), Rottnest Island (Western Australia). These sites span ~30° of latitude and ~38° longitude, range from tropical to cold temperate zones, and are influenced by both local and globally significant oceanographic and climatic features. All sequence datasets are provided in both raw and processed fashion. Currently 952 samples are publically available for bacteria and archaea which include 88,951,761 bacterial (72,435 unique) and 70,463,079 archaeal (24,205 unique) 16 S rRNA v1-3 gene sequences, and 388 samples are available for eukaryotes which include 39,801,050 (78,463 unique) 18 S rRNA v4 gene sequences.

UR - http://www.scopus.com/inward/record.url?scp=85050378918&partnerID=8YFLogxK

UR - http://purl.org/au-research/grants/arc/DP150102326

U2 - 10.1038/sdata.2018.130

DO - 10.1038/sdata.2018.130

M3 - Article

C2 - 30015804

SN - 2052-4463

VL - 5

SP - 1

EP - 10

JO - Scientific Data

JF - Scientific Data

M1 - 180130

ER -

Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative

Abstract

Bibliographical note

Access to Document

Other files and links

Fingerprint

Cite this