The EcoCyc and MetaCyc databases

Peter D. Karp; Monica Riley; Milton Saier; Ian T. Paulsen; Suzanne M. Paley; Alida Pellegrini-Toole

The EcoCyc and MetaCyc databases

Peter D. Karp^*, Monica Riley, Milton Saier, Ian T. Paulsen, Suzanne M. Paley, Alida Pellegrini-Toole

^*Corresponding author for this work

Research output: Contribution to journal › Short survey › peer-review

232 Citations (Scopus)

Abstract

EcoCyc is an organism-specific Pathway/Genome Database that describes the metabolic and signal-transduction pathways of Escherichia coli, its enzymes, and - a new addition - its transport proteins. MetaCyc is a new metabolic-pathway database that describes pathways and enzymes of many different organisms, with a microbial focus. Both databases are queried using the Pathway Tools graphical user interface, which provides a wide variety of query operations and visualization tools. EcoCyc and MetaCyc are available at http://ecocyc.PangeaSystems.com/ecocyc/.

Original language	English
Pages (from-to)	56-59
Number of pages	4
Journal	Nucleic Acids Research
Volume	28
Issue number	1
Publication status	Published - 1 Jan 2000
Externally published	Yes

Cite this

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AU - Karp, Peter D.

AU - Riley, Monica

AU - Saier, Milton

AU - Paulsen, Ian T.

AU - Paley, Suzanne M.

AU - Pellegrini-Toole, Alida

PY - 2000/1/1

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N2 - EcoCyc is an organism-specific Pathway/Genome Database that describes the metabolic and signal-transduction pathways of Escherichia coli, its enzymes, and - a new addition - its transport proteins. MetaCyc is a new metabolic-pathway database that describes pathways and enzymes of many different organisms, with a microbial focus. Both databases are queried using the Pathway Tools graphical user interface, which provides a wide variety of query operations and visualization tools. EcoCyc and MetaCyc are available at http://ecocyc.PangeaSystems.com/ecocyc/.

AB - EcoCyc is an organism-specific Pathway/Genome Database that describes the metabolic and signal-transduction pathways of Escherichia coli, its enzymes, and - a new addition - its transport proteins. MetaCyc is a new metabolic-pathway database that describes pathways and enzymes of many different organisms, with a microbial focus. Both databases are queried using the Pathway Tools graphical user interface, which provides a wide variety of query operations and visualization tools. EcoCyc and MetaCyc are available at http://ecocyc.PangeaSystems.com/ecocyc/.

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M3 - Short survey

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SN - 0305-1048

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SP - 56

EP - 59

JO - Nucleic Acids Research

JF - Nucleic Acids Research

IS - 1

ER -

The EcoCyc and MetaCyc databases

Abstract

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