The EcoCyc database: reflecting new knowledge about Escherichia coli K-12

Ingrid M. Keseler; Amanda Mackie; Alberto Santos-Zavaleta; Richard Billington; César Bonavides-Martínez; Ron Caspi; Carol Fulcher; Socorro Gama-Castro; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Luis Muñiz-Rascado; Quang Ong; Suzanne Paley; Martin Peralta-Gil; Pallavi Subhraveti; David A. Velázquez-Ramírez; Daniel Weaver; Julio Collado-Vides; Ian Paulsen; Peter D. Karp

doi:10.1093/nar/gkw1003

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12

Ingrid M. Keseler, Amanda Mackie, Alberto Santos-Zavaleta, Richard Billington, César Bonavides-Martínez, Ron Caspi, Carol Fulcher, Socorro Gama-Castro, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne Paley, Martin Peralta-Gil, Pallavi Subhraveti, David A. Velázquez-Ramírez, Daniel Weaver, Julio Collado-Vides, Ian PaulsenPeter D. Karp^*

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

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Abstract

EcoCyc (EcoCyc.org) is a freely accessible, comprehensive database that collects and summarizes experimental data for Escherichia coli K-12, the beststudied bacterial model organism. New experimental discoveries about gene products, their function and regulation, new metabolic pathways, enzymes and cofactors are regularly added to EcoCyc. New Smart-Table tools allow users to browse collections of related EcoCyc content. SmartTables can also serve as repositories for user- or curator-generated lists. EcoCyc now supports running and modifying E. coli metabolic models directly on the EcoCyc website.

Original language	English
Pages (from-to)	D543-D550
Number of pages	8
Journal	Nucleic Acids Research
Volume	45
Issue number	D1
DOIs	https://doi.org/10.1093/nar/gkw1003
Publication status	Published - Jan 2017

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Copyright the Author(s) 2016. Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.

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Publisher version (open access)Final published version, 1 MBLicence: CC BY-NC

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Keseler, I. M., Mackie, A., Santos-Zavaleta, A., Billington, R., Bonavides-Martínez, C., Caspi, R., Fulcher, C., Gama-Castro, S., Kothari, A., Krummenacker, M., Latendresse, M., Muñiz-Rascado, L., Ong, Q., Paley, S., Peralta-Gil, M., Subhraveti, P., Velázquez-Ramírez, D. A., Weaver, D., Collado-Vides, J., ... Karp, P. D. (2017). The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. Nucleic Acids Research, 45(D1), D543-D550. https://doi.org/10.1093/nar/gkw1003

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abstract = "EcoCyc (EcoCyc.org) is a freely accessible, comprehensive database that collects and summarizes experimental data for Escherichia coli K-12, the beststudied bacterial model organism. New experimental discoveries about gene products, their function and regulation, new metabolic pathways, enzymes and cofactors are regularly added to EcoCyc. New Smart-Table tools allow users to browse collections of related EcoCyc content. SmartTables can also serve as repositories for user- or curator-generated lists. EcoCyc now supports running and modifying E. coli metabolic models directly on the EcoCyc website.",

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Keseler, IM, Mackie, A, Santos-Zavaleta, A, Billington, R, Bonavides-Martínez, C, Caspi, R, Fulcher, C, Gama-Castro, S, Kothari, A, Krummenacker, M, Latendresse, M, Muñiz-Rascado, L, Ong, Q, Paley, S, Peralta-Gil, M, Subhraveti, P, Velázquez-Ramírez, DA, Weaver, D, Collado-Vides, J, Paulsen, I & Karp, PD 2017, 'The EcoCyc database: reflecting new knowledge about Escherichia coli K-12', Nucleic Acids Research, vol. 45, no. D1, pp. D543-D550. https://doi.org/10.1093/nar/gkw1003

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AU - Fulcher, Carol

AU - Gama-Castro, Socorro

AU - Kothari, Anamika

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AU - Muñiz-Rascado, Luis

AU - Ong, Quang

AU - Paley, Suzanne

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AU - Weaver, Daniel

AU - Collado-Vides, Julio

AU - Paulsen, Ian

AU - Karp, Peter D.

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The EcoCyc database: reflecting new knowledge about Escherichia coli K-12

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