The EcoCyc database: reflecting new knowledge about Escherichia coli K-12

Ingrid M. Keseler, Amanda Mackie, Alberto Santos-Zavaleta, Richard Billington, César Bonavides-Martínez, Ron Caspi, Carol Fulcher, Socorro Gama-Castro, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne Paley, Martin Peralta-Gil, Pallavi Subhraveti, David A. Velázquez-Ramírez, Daniel Weaver, Julio Collado-Vides, Ian PaulsenPeter D. Karp*

*Corresponding author for this work

    Research output: Contribution to journalArticlepeer-review

    307 Citations (Scopus)
    88 Downloads (Pure)

    Abstract

    EcoCyc (EcoCyc.org) is a freely accessible, comprehensive database that collects and summarizes experimental data for Escherichia coli K-12, the beststudied bacterial model organism. New experimental discoveries about gene products, their function and regulation, new metabolic pathways, enzymes and cofactors are regularly added to EcoCyc. New Smart-Table tools allow users to browse collections of related EcoCyc content. SmartTables can also serve as repositories for user- or curator-generated lists. EcoCyc now supports running and modifying E. coli metabolic models directly on the EcoCyc website.

    Original languageEnglish
    Pages (from-to)D543-D550
    Number of pages8
    JournalNucleic Acids Research
    Volume45
    Issue numberD1
    DOIs
    Publication statusPublished - Jan 2017

    Bibliographical note

    Copyright the Author(s) 2016. Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.

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