The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets

Weston B. Struwe; Sanjay Agravat; Kiyoko F. Aoki-Kinoshita; Matthew P. Campbell; Catherine E. Costello; Anne Dell; Ten Feizi; Stuart M. Haslam; Niclas G. Karlsson; Kay Hooi Khoo; Daniel Kolarich; Yan Liu; Ryan Mcbride; Milos V. Novotny; Nicolle H. Packer; James C. Paulson; Erdmann Rapp; Rene Ranzinger; Pauline M. Rudd; David F. Smith; Michael Tiemeyer; Lance Wells; William S. York; Joseph Zaia; Carsten Kettner

doi:10.1093/glycob/cww082

The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets

Weston B. Struwe^*, Sanjay Agravat, Kiyoko F. Aoki-Kinoshita, Matthew P. Campbell, Catherine E. Costello, Anne Dell, Ten Feizi, Stuart M. Haslam, Niclas G. Karlsson, Kay Hooi Khoo, Daniel Kolarich, Yan Liu, Ryan Mcbride, Milos V. Novotny, Nicolle H. Packer, James C. Paulson, Erdmann Rapp, Rene Ranzinger, Pauline M. Rudd, David F. SmithMichael Tiemeyer, Lance Wells, William S. York, Joseph Zaia, Carsten Kettner

^*Corresponding author for this work

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Abstract

The minimum information required for a glycomics experiment (MIRAGE) project was established in 2011 to provide guidelines to aid in data reporting from all types of experiments in glycomics research including mass spectrometry (MS), liquid chromatography, glycan arrays, data handling and sample preparation. MIRAGE is a concerted effort of the wider glycomics community that considers the adaptation of reporting guidelines as an important step towards critical evaluation and dissemination of datasets as well as broadening of experimental techniques worldwide. The MIRAGE Commission published reporting guidelines for MS data and here we outline guidelines for sample preparation. The sample preparation guidelines include all aspects of sample generation, purification and modification from biological and/or synthetic carbohydrate material. The application of MIRAGE sample preparation guidelines will lead to improved recording of experimental protocols and reporting of understandable and reproducible glycomics datasets.

Original language	English
Pages (from-to)	907-910
Number of pages	4
Journal	Glycobiology
Volume	26
Issue number	9
DOIs	https://doi.org/10.1093/glycob/cww082
Publication status	Published - 1 Sept 2016

Bibliographical note

Copyright the Author(s) 2016. Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.

Keywords

glycobiology
glycomics
MIRAGE
sample preparation

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Struwe, W. B., Agravat, S., Aoki-Kinoshita, K. F., Campbell, M. P., Costello, C. E., Dell, A., Feizi, T., Haslam, S. M., Karlsson, N. G., Khoo, K. H., Kolarich, D., Liu, Y., Mcbride, R., Novotny, M. V., Packer, N. H., Paulson, J. C., Rapp, E., Ranzinger, R., Rudd, P. M., ... Kettner, C. (2016). The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets. Glycobiology, 26(9), 907-910. https://doi.org/10.1093/glycob/cww082

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abstract = "The minimum information required for a glycomics experiment (MIRAGE) project was established in 2011 to provide guidelines to aid in data reporting from all types of experiments in glycomics research including mass spectrometry (MS), liquid chromatography, glycan arrays, data handling and sample preparation. MIRAGE is a concerted effort of the wider glycomics community that considers the adaptation of reporting guidelines as an important step towards critical evaluation and dissemination of datasets as well as broadening of experimental techniques worldwide. The MIRAGE Commission published reporting guidelines for MS data and here we outline guidelines for sample preparation. The sample preparation guidelines include all aspects of sample generation, purification and modification from biological and/or synthetic carbohydrate material. The application of MIRAGE sample preparation guidelines will lead to improved recording of experimental protocols and reporting of understandable and reproducible glycomics datasets.",

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note = "Copyright the Author(s) 2016. Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.",

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Struwe, WB, Agravat, S, Aoki-Kinoshita, KF, Campbell, MP, Costello, CE, Dell, A, Feizi, T, Haslam, SM, Karlsson, NG, Khoo, KH, Kolarich, D, Liu, Y, Mcbride, R, Novotny, MV, Packer, NH, Paulson, JC, Rapp, E, Ranzinger, R, Rudd, PM, Smith, DF, Tiemeyer, M, Wells, L, York, WS, Zaia, J & Kettner, C 2016, 'The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets', Glycobiology, vol. 26, no. 9, pp. 907-910. https://doi.org/10.1093/glycob/cww082

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AU - Feizi, Ten

AU - Haslam, Stuart M.

AU - Karlsson, Niclas G.

AU - Khoo, Kay Hooi

AU - Kolarich, Daniel

AU - Liu, Yan

AU - Mcbride, Ryan

AU - Novotny, Milos V.

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AU - Paulson, James C.

AU - Rapp, Erdmann

AU - Ranzinger, Rene

AU - Rudd, Pauline M.

AU - Smith, David F.

AU - Tiemeyer, Michael

AU - Wells, Lance

AU - York, William S.

AU - Zaia, Joseph

AU - Kettner, Carsten

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The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets

Abstract

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Keywords

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