trajr: an R package for characterisation of animal trajectories

Donald James McLean*, Marta A. Skowron Volponi

*Corresponding author for this work

    Research output: Contribution to journalArticlepeer-review

    122 Citations (Scopus)
    337 Downloads (Pure)

    Abstract

    Quantitative characterisation of the trajectories of moving animals is an important component of many behavioural and ecological studies, however methods are complicated and varied, and sometimes require well-developed programming skills to implement. Here, we introduce trajr, an R package that serves to analyse animal paths, from unicellular organisms, through insects to whales. It makes a variety of statistical characterisations of trajectories, such as tortuosity, speed and changes in direction, available to biologists who may not have a background in programming. We discuss a range of indices that have been used by researchers, describe the package in detail, then use movement observations of whales and clearwing moths to demonstrate some of the capabilities of trajr. As an open-source R package, trajr encourages open and reproducible research. It supports the implementation of additional methods by providing access to trajectory analysis “building blocks,” allows the full suite of R statistical analysis tools to be applied to trajectory analysis, and the source code can be independently validated.

    Original languageEnglish
    Pages (from-to)440-448
    Number of pages9
    JournalEthology
    Volume124
    Issue number6
    Early online date11 Apr 2018
    DOIs
    Publication statusPublished - Jun 2018

    Bibliographical note

    Copyright the Author(s) 2018. Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.

    Keywords

    • behaviour
    • locomotor mimicry
    • navigation
    • speed
    • tortuosity
    • whales

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