TRAMPR: AN R package for analysis and matching of terminal-restriction fragment length polymorphism (TRFLP) profiles

Richard G. Fitzjohn, Ian A. Dickie*

*Corresponding author for this work

    Research output: Contribution to journalArticlepeer-review

    46 Citations (Scopus)

    Abstract

    trampr (TRFLP analysis and matching package for r) is a package for matching multiple terminal restriction fragment length polymorphism (TRFLP) profiles between unknown samples and a database of known TRFLP profiles in order to infer the presence of species in environmental samples. It permits simultaneous analysis of multiple samples and facilitates direct workflow from electrophoresis output through to community analyses. trampr also resolves the issues of multiple TRFLP profiles within a species and (conversely) shared TRFLP profiles across species.

    Original languageEnglish
    Pages (from-to)583-587
    Number of pages5
    JournalMolecular Ecology Notes
    Volume7
    Issue number4
    DOIs
    Publication statusPublished - Jul 2007

    Keywords

    • Community analysis
    • Pattern matching
    • R
    • TRFLP

    Fingerprint

    Dive into the research topics of 'TRAMPR: AN R package for analysis and matching of terminal-restriction fragment length polymorphism (TRFLP) profiles'. Together they form a unique fingerprint.

    Cite this