TRAMPR

AN R package for analysis and matching of terminal-restriction fragment length polymorphism (TRFLP) profiles

Richard G. Fitzjohn, Ian A. Dickie*

*Corresponding author for this work

Research output: Contribution to journalArticle

44 Citations (Scopus)

Abstract

trampr (TRFLP analysis and matching package for r) is a package for matching multiple terminal restriction fragment length polymorphism (TRFLP) profiles between unknown samples and a database of known TRFLP profiles in order to infer the presence of species in environmental samples. It permits simultaneous analysis of multiple samples and facilitates direct workflow from electrophoresis output through to community analyses. trampr also resolves the issues of multiple TRFLP profiles within a species and (conversely) shared TRFLP profiles across species.

Original languageEnglish
Pages (from-to)583-587
Number of pages5
JournalMolecular Ecology Notes
Volume7
Issue number4
DOIs
Publication statusPublished - Jul 2007

Keywords

  • Community analysis
  • Pattern matching
  • R
  • TRFLP

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